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polygalacturonase inhibitor (DUF639) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832403, updated on 18-Sep-2024

Summary

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Official Full Name
polygalacturonase inhibitor (DUF639)
Primary source
TAIR:AT5G23390
Locus tag
AT5G23390
See related
Araport:AT5G23390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32G24.2; T32G24_2
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (7870409..7874505, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GRAM domain-containing protein / ABA-responsive protein-like protein Neighboring gene hypothetical protein (DUF789) Neighboring gene Cox19-like CHCH family protein Neighboring gene Leucine-rich repeat (LRR) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122245.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
polygalacturonase inhibitor (DUF639)
NP_197730.1
  • Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7870409..7874505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122245.4 → NP_197730.1  polygalacturonase inhibitor (DUF639) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197730.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FCI0, Q8RX89
    Conserved Domains (1) summary
    pfam04842
    Location:46 → 722
    DUF639; Plant protein of unknown function (DUF639)
Nucleotide Protein
Heading Accession and Version

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