NF-YB13 nuclear factor Y, subunit B13 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: NF-YB13
Official Full Name: nuclear factor Y, subunit B13
Primary source: TAIR:AT5G23090
Locus tag: AT5G23090
See related: Araport:AT5G23090
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ''nuclear factor Y; MYJ24.8; MYJ24_8; nuclear factor Y; subunit B13; subunit B13''
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Genomic context

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See NF-YB13 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 5

Sequence:: Chromosome: 5; NC_003076.8 (7749030..7750612)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001036850.1

Supported by ESTs:

NM_001343789.1

Supported by ESTs:

NM_122215.3

Supported by ESTs:

NM_180729.3

Supported by ESTs:

NM_180730.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: nuclear factor Y, subunit B13

NP_001031927.1

''nuclear factor Y, subunit B13'' (NF-YB13); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.2); Has 1502 Blast hits to 1502 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 387; Plants - 520; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

NP_197700.2

''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1261 Blast hits to 1261 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 310; Plants - 511; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).

NP_851060.1

''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

NP_851061.1

''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

7749030..7750612

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_180729.3 → NP_851060.1 nuclear factor Y, subunit B13 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851060.1

Status: REVIEWED

UniProtKB/Swiss-Prot

P49592

UniProtKB/TrEMBL

A0A178UF16, A0A384KDH6, B9DHA9

Conserved Domains (1) summary

cl23735
Location:8 → 139

H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
NM_180730.3 → NP_851061.1 nuclear factor Y, subunit B13 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851061.1

Status: REVIEWED

UniProtKB/Swiss-Prot

P49592

UniProtKB/TrEMBL

A0A178UF16, A0A384KDH6, B9DHA9

Conserved Domains (1) summary

cl23735
Location:8 → 139

H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
NM_001036850.1 → NP_001031927.1 nuclear factor Y, subunit B13 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031927.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UEI9, F4KBG0

Conserved Domains (1) summary

cl23735
Location:8 → 138

H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
NM_001343789.1 → NP_001330452.1 nuclear factor Y, subunit B13 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

P49592

UniProtKB/TrEMBL

A0A178UF16, A0A384KDH6, B9DHA9

Conserved Domains (1) summary

cl23735
Location:8 → 139

H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
NM_122215.3 → NP_197700.2 nuclear factor Y, subunit B13 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_197700.2

Status: REVIEWED

UniProtKB/TrEMBL

F4KBG1

Conserved Domains (1) summary

cl23735
Location:16 → 126

H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...