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TET12 tetraspanin12 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832367, updated on 18-Sep-2024

Summary

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Official Symbol
TET12
Official Full Name
tetraspanin12
Primary source
TAIR:AT5G23030
Locus tag
AT5G23030
See related
Araport:AT5G23030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYJ24.2; MYJ24_2; tetraspanin12
Summary
Member of TETRASPANIN family
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Genomic context

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See TET12 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (7726702..7728369)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methylthioalkylmalate synthase 1 Neighboring gene 2-isopropylmalate synthase 2 Neighboring gene Putative membrane lipoprotein Neighboring gene cell growth defect factor-like protein (DUF3353) Neighboring gene acyl-activating enzyme 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_122209.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in auxin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tetraspanin12
NP_197694.1
  • tetraspanin12 (TET12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin11 (TAIR:AT1G18520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7726702..7728369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122209.4 → NP_197694.1  tetraspanin12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197694.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FN51
    UniProtKB/TrEMBL
    A0A178U8Y6, A0A5S9Y6H8, A0A654G440
    Conserved Domains (1) summary
    pfam00335
    Location:5 → 227
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FN51.1

Gene LinkOut

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