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FBD / Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832323, updated on 18-Sep-2024

Summary

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Official Full Name
FBD / Leucine Rich Repeat domains containing protein
Primary source
TAIR:AT5G22600
Locus tag
AT5G22600
See related
Araport:AT5G22600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDJ22.2; MDJ22_2
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (7509843..7511788)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Stress responsive A/B Barrel Domain-containing protein Neighboring gene Leucine Rich Repeat protein family Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene phosphoglycerate/bisphosphoglycerate mutase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001343740.1
NM_122166.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
FBD / Leucine Rich Repeat domains containing protein
NP_001318619.1
  • FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1); Has 687 Blast hits to 669 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 677; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7509843..7511788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343740.1 → NP_001318619.1  FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1PDU4
    Conserved Domains (3) summary
    smart00579
    Location:250 → 321
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:11 → 31
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:32 → 56
    LRR_2; Leucine Rich Repeat

  2. NM_122166.4 → NP_197652.2  FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197652.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1PDU4
    Conserved Domains (3) summary
    smart00579
    Location:250 → 321
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:11 → 31
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:32 → 56
    LRR_2; Leucine Rich Repeat
Nucleotide Protein
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