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WRKY38 WRKY DNA-binding protein 38 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832320, updated on 18-Sep-2024

Summary

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Official Symbol
WRKY38
Official Full Name
WRKY DNA-binding protein 38
Primary source
TAIR:AT5G22570
Locus tag
AT5G22570
See related
Araport:AT5G22570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38; ATWRKY38; MQJ16.11; MQJ16_11; WRKY DNA-binding protein 38
Summary
member of WRKY Transcription Factor; Group III
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Genomic context

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See WRKY38 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (7495455..7496990, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene Stress responsive A/B Barrel Domain-containing protein Neighboring gene Leucine Rich Repeat protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PKS5, a SNF1-related kinase, interacts with and phosphorylates NPR1, and modulates expression of WRKY38 and WRKY62. Xie C, et al. J Genet Genomics, 2010 Jun. PMID 20621018
  2. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Kim KC, et al. Plant Cell, 2008 Sep. PMID 18776063, Free PMC Article
  3. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. Wang D, et al. PLoS Pathog, 2006 Nov. PMID 17096590, Free PMC Article
  4. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
  5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_122163.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within salicylic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
WRKY DNA-binding protein 38
NP_197649.2
  • WRKY DNA-binding protein 38 (WRKY38); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 62 (TAIR:AT5G01900.1); Has 3118 Blast hits to 2692 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3102; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7495455..7496990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122163.3 → NP_197649.2  WRKY DNA-binding protein 38 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197649.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GWF1, Q9FK82
    UniProtKB/TrEMBL
    A0A178UNG1, A0A654G368
    Conserved Domains (1) summary
    smart00774
    Location:109 → 169
    WRKY; DNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GWF1.1

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