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RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832250, updated on 18-Sep-2024

Summary

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Official Full Name
RNI-like superfamily protein
Primary source
TAIR:AT5G21900
Locus tag
AT5G21900
See related
Araport:AT5G21900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (7238174..7240535)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cytokinin oxidase 7 Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene YGGT family protein Neighboring gene uncharacterized protein Neighboring gene hybrid signal transduction histidine kinase M-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RAD7 homologues contribute to Arabidopsis UV tolerance. Lahari T, et al. Plant Sci, 2018 Dec. PMID 30466592
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_147873.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within nucleotide-excision repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to UV-C IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNI-like superfamily protein
NP_680178.1
  • RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7238174..7240535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343704.1 → NP_001330253.1  RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA90
    Conserved Domains (2) summary
    cd09293
    Location:221 → 405
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:228 → 256
    LRR_AMN1; leucine-rich repeat [structural motif]

  2. NM_147873.3 → NP_680178.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_680178.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIN3, Q9C597
    Conserved Domains (2) summary
    cd09293
    Location:221 → 405
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:257 → 282
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
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