U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Glyceraldehyde-3-phosphate dehydrogenase-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832230, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Glyceraldehyde-3-phosphate dehydrogenase-like family protein
Primary source
TAIR:AT5G21060
Locus tag
AT5G21060
See related
Araport:AT5G21060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F18.90; T10F18_90
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (7148978..7152922, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box protein 2 Neighboring gene hyccin Neighboring gene Fe(3+) dicitrate transport system permease Neighboring gene Uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001036839.2
NM_001036840.2
NM_122114.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables homoserine dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in threonine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plastid HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Glyceraldehyde-3-phosphate dehydrogenase-like family protein
NP_001031916.1
  • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7510 Blast hits to 7510 proteins in 2318 species: Archae - 181; Bacteria - 5355; Metazoa - 3; Fungi - 163; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).
NP_001031917.1
  • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7513 Blast hits to 7513 proteins in 2318 species: Archae - 181; Bacteria - 5355; Metazoa - 3; Fungi - 163; Plants - 133; Viruses - 0; Other Eukaryotes - 1678 (source: NCBI BLink).
NP_197605.1
  • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7148978..7152922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122114.3 → NP_197605.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197605.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB93, Q84JZ4, Q8LF92
    Conserved Domains (1) summary
    PLN02700
    Location:1 → 376
    PLN02700; homoserine dehydrogenase family protein

  2. NM_001036839.2 → NP_001031916.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031916.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U956, F4K6Y8, Q8LF92
    Conserved Domains (2) summary
    PLN02700
    Location:1 → 378
    PLN02700; homoserine dehydrogenase family protein
    pfam00742
    Location:184 → 371
    Homoserine_dh; Homoserine dehydrogenase

  3. NM_001036840.2 → NP_001031917.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031917.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K6Y9, Q8LF92
    Conserved Domains (2) summary
    PLN02700
    Location:1 → 378
    PLN02700; homoserine dehydrogenase family protein
    pfam00742
    Location:184 → 371
    Homoserine_dh; Homoserine dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.