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PAZ domain-containing protein / piwi domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832227, updated on 18-Sep-2024

Summary

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Official Full Name
PAZ domain-containing protein / piwi domain-containing protein
Primary source
TAIR:AT5G21030
Locus tag
AT5G21030
See related
Araport:AT5G21030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F18.3
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Genomic context

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Location:
chromosome: 5
Exon count:
21
Sequence:
Chromosome: 5; NC_003076.8 (7139817..7144272, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene BTB-POZ and MATH domain 5 Neighboring gene uncharacterized protein Neighboring gene F-box protein 2 Neighboring gene hyccin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PAZ domain-containing protein / piwi domain-containing protein
NP_197602.2
  • PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 1838 Blast hits to 1796 proteins in 202 species: Archae - 2; Bacteria - 0; Metazoa - 963; Fungi - 280; Plants - 458; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7139817..7144272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122111.3 → NP_197602.2  PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197602.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E984
    UniProtKB/TrEMBL
    A0A5S9Y605
    Conserved Domains (5) summary
    PLN03202
    Location:1 → 850
    PLN03202; protein argonaute; Provisional
    cd04657
    Location:405 → 805
    Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
    pfam02170
    Location:261 → 375
    PAZ; PAZ domain
    pfam08699
    Location:195 → 244
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:27 → 183
    ArgoN; N-terminal domain of argonaute

  2. NM_001343695.1 → NP_001331316.1  PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDI0, A0A5S9Y605
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E984.1

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