BPM5 BTB-POZ and MATH domain 5 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: BPM5
Official Full Name: BTB-POZ and MATH domain 5
Primary source: TAIR:AT5G21010
Locus tag: AT5G21010
See related: Araport:AT5G21010
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATBPM5; BTB-POZ and MATH domain 5; BTB-POZ AND MATH DOMAIN 5; T10F18.30; T10F18_30
Summary: Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).
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Genomic context

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See BPM5 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (7135961..7138711)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

BPM5 interact with members of the ERF/AP2 transcription factor family.
Title: Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_122109.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to salt stress	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within cellular response to water deprivation	IEP Inferred from Expression Pattern more info	PubMed
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to osmotic stress	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: BTB-POZ and MATH domain 5

NP_197600.1

BTB-POZ and MATH domain 5 (BPM5); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 6 (TAIR:AT3G43700.1); Has 6893 Blast hits to 6668 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4820; Fungi - 220; Plants - 1514; Viruses - 55; Other Eukaryotes - 284 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

7135961..7138711

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_122109.4 → NP_197600.1 BTB-POZ and MATH domain 5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_197600.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q1EBV6, Q8LFW4, Q94B33

UniProtKB/TrEMBL

A0A178URE4, A0A5S9Y6L5

Conserved Domains (3) summary

cd00121
Location:29 → 162

MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

cd18280
Location:184 → 309

BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family

cd14736
Location:309 → 370

BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family