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kish-A-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832139, updated on 18-Sep-2024

Summary

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Official Full Name
kish-A-like protein
Primary source
TAIR:AT5G20165
Locus tag
AT5G20165
See related
Araport:AT5G20165
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (6805542..6807345, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPX domain-containing protein 1 Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene RNA polymerase II transcription mediator Neighboring gene Ribosomal protein L36 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085138.2
NM_001343641.1
NM_001343642.1
NM_147869.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
kish-A-like protein
NP_001078607.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 285 Blast hits to 285 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 72; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
NP_001318607.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653).
NP_680174.2
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6805542..6807345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085138.2 → NP_001078607.1  kish-A-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078607.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8S6, A0A384L7N9, A8MSB3
    Conserved Domains (1) summary
    pfam06842
    Location:10 → 43
    DUF1242; Protein of unknown function (DUF1242)

  2. NM_147869.3 → NP_680174.2  kish-A-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_680174.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UA21, Q6IDB1
    Conserved Domains (1) summary
    pfam06842
    Location:10 → 43
    DUF1242; Protein of unknown function (DUF1242)

  3. NM_001343642.1 → NP_001331371.1  kish-A-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8S6, A0A384L7N9, A8MSB3
    Conserved Domains (1) summary
    pfam06842
    Location:10 → 43
    DUF1242; Protein of unknown function (DUF1242)

  4. NM_001343641.1 → NP_001318607.1  kish-A-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K459
Nucleotide Protein
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