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Plant Tudor-like RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832125, updated on 18-Sep-2024

Summary

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Official Full Name
Plant Tudor-like RNA-binding protein
Primary source
TAIR:AT5G20030
Locus tag
AT5G20030
See related
Araport:AT5G20030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28I16.180; F28I16_180
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (6764727..6766702, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RAS-related nuclear protein-1 Neighboring gene RAS-related GTP-binding nuclear protein 2 Neighboring gene isopentenyltransferase 9 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343635.1
NM_122010.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant Tudor-like RNA-binding protein
NP_197503.1
  • Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6764727..6766702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122010.3 → NP_197503.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197503.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUJ5, A0A384K9F1, Q8LES5
    Conserved Domains (3) summary
    smart00743
    Location:64 → 120
    Agenet; Tudor-like domain present in plant sequences
    pfam03735
    Location:265 → 320
    ENT; ENT domain
    pfam05641
    Location:6 → 58
    Agenet; Agenet domain

  2. NM_001343635.1 → NP_001330569.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUJ5, A0A384K9F1, Q8LES5
    Conserved Domains (3) summary
    smart00743
    Location:64 → 120
    Agenet; Tudor-like domain present in plant sequences
    pfam03735
    Location:265 → 320
    ENT; ENT domain
    pfam05641
    Location:6 → 58
    Agenet; Agenet domain
Nucleotide Protein
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