U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tudor domain protein (DUF1767) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832117, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
tudor domain protein (DUF1767)
Primary source
TAIR:AT5G19950
Locus tag
AT5G19950
See related
Araport:AT5G19950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28I16.100; F28I16_100
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (6740777..6743850, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GRAS family transcription factor family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_122002.3
NM_180523.3
NM_203084.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
tudor domain protein (DUF1767)
NP_568387.1
  • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_850854.1
  • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 573 Blast hits to 514 proteins in 137 species: Archae - 0; Bacteria - 22; Metazoa - 276; Fungi - 58; Plants - 111; Viruses - 3; Other Eukaryotes - 103 (source: NCBI BLink).
NP_974813.1
  • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6740777..6743850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180523.3 → NP_850854.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850854.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UI80, A0A654G2V3, Q8L502
    Conserved Domains (1) summary
    pfam08585
    Location:32 → 185
    RMI1_N; RecQ mediated genome instability protein

  2. NM_203084.2 → NP_974813.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974813.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UI80, F4K2P4
    Conserved Domains (1) summary
    pfam08585
    Location:32 → 185
    RMI1_N; RecQ mediated genome instability protein

  3. NM_122002.3 → NP_568387.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568387.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UI80, A0A654G2V3, Q8L502
    Conserved Domains (1) summary
    pfam08585
    Location:32 → 185
    RMI1_N; RecQ mediated genome instability protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.