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mediator of RNA polymerase II transcription subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832068, updated on 18-Sep-2024

Summary

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Official Full Name
mediator of RNA polymerase II transcription subunit
Primary source
TAIR:AT5G19480
Locus tag
AT5G19480
See related
Araport:AT5G19480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7K24.230; F7K24_230
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (6571472..6573623)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 24 Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene transferases/nucleotidyltransferase Neighboring gene Histone superfamily protein Neighboring gene Tryptophan/tyrosine permease Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036830.3
NM_001343607.1
NM_001343608.1
NM_121953.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit
NP_001031907.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 15754 Blast hits to 7644 proteins in 441 species: Archae - 6; Bacteria - 451; Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses - 38; Other Eukaryotes - 4987 (source: NCBI BLink).
NP_197449.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6571472..6573623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121953.3 → NP_197449.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197449.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NQD9
    UniProtKB/TrEMBL
    A0A178UM11

  2. NM_001343607.1 → NP_001331155.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NQD9
    UniProtKB/TrEMBL
    A0A178UM11

  3. NM_001343608.1 → NP_001331154.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NQD9
    UniProtKB/TrEMBL
    A0A178UM11

  4. NM_001036830.3 → NP_001031907.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031907.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NQD9
    UniProtKB/TrEMBL
    A0A178UM11
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NQD9.1

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