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RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832055, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT5G19350
Locus tag
AT5G19350
See related
Araport:AT5G19350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7K24.100; F7K24_100
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (6518777..6521483)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 34 Neighboring gene rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNA-binding protein RBP45D of Arabidopsis promotes transgene silencing and flowering time. Wang L, et al. Plant J, 2022 Mar. PMID 34919766
  2. The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. Chang P, et al. Plant Cell, 2022 Feb 3. PMID 34791475, Free PMC Article
  3. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
  4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis.
    Title: The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085135.2
NM_121940.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytoplasmic stress granule ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_001078604.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29846 Blast hits to 17541 proteins in 840 species: Archae - 12; Bacteria - 2412; Metazoa - 15092; Fungi - 3490; Plants - 6065; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink).
NP_197436.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G11650.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6518777..6521483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121940.5 → NP_197436.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197436.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K135, Q8VXZ9
    UniProtKB/TrEMBL
    A0A178UT26, A0A5S9Y5H4, A0A7G2FBZ5
    Conserved Domains (3) summary
    cd12344
    Location:25 → 105
    RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:115 → 194
    RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cl17169
    Location:237 → 306
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001085135.2 → NP_001078604.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078604.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FBZ5
    Conserved Domains (4) summary
    cd12344
    Location:25 → 105
    RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:115 → 194
    RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    TIGR01661
    Location:17 → 305
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:233 → 302
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VXZ9.1

Gene LinkOut

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