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AWPM-19-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832015, updated on 18-Sep-2024

Summary

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Official Full Name
AWPM-19-like family protein
Primary source
TAIR:AT5G18970
Locus tag
AT5G18970
See related
Araport:AT5G18970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17K4.4
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (6333211..6334642, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mo25 family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene FAR1-related sequence 12 Neighboring gene ARM repeat superfamily protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_121902.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
AWPM-19-like family protein
NP_197398.1
  • AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6333211..6334642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121902.4 → NP_197398.1  AWPM-19-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197398.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJQ5, Q8LG79
    Conserved Domains (1) summary
    pfam05512
    Location:15 → 155
    AWPM-19; AWPM-19-like family
Nucleotide Protein
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