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F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831996, updated on 18-Sep-2024

Summary

Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT5G18780
Locus tag
AT5G18780
See related
Araport:AT5G18780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17K4.30; F17K4_30
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Genomic context

Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (6264245..6266174)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene F-box/FBD-like domains containing protein Neighboring gene Ribosomal protein L33 family protein Neighboring gene Cox19-like CHCH family protein Neighboring gene SC35-like splicing factor 28

General gene information

NM_001203403.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion  

General protein information

Preferred Names
F-box/RNI-like superfamily protein
NP_001190332.1
  • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G18770.1).
NP_197379.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6264245..6266174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121883.3 → NP_197379.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197379.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JY47, Q56YH2
    UniProtKB/TrEMBL
    A0A178UJP8, A0A5S9Y5X3
    Conserved Domains (3) summary
    smart00579
    Location:368 → 441
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:137 → 157
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:11 → 53
    F-box; F-box domain
  2. NM_001343568.1 → NP_001329977.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULP2, A0A1P8B9D6
  3. NM_001343569.1 → NP_001329976.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULP2, A0A1P8B9D6
  4. NM_001203403.2 → NP_001190332.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190332.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JY47, Q56YH2
    UniProtKB/TrEMBL
    A0A178UJP8, A0A5S9Y5X3
    Conserved Domains (3) summary
    smart00579
    Location:368 → 441
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:137 → 157
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:11 → 53
    F-box; F-box domain
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