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Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831977, updated on 18-Sep-2024

Summary

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Official Full Name
Galactose oxidase/kelch repeat superfamily protein
Primary source
TAIR:AT5G18590
Locus tag
AT5G18590
See related
Araport:AT5G18590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28N17.70; T28N17_70
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (6178354..6182761, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GTP1/OBG family protein Neighboring gene tonneau 2 (TON2) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Thioredoxin superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene chromatin remodeling factor17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121864.4
NM_180515.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Galactose oxidase/kelch repeat superfamily protein
NP_197360.2
  • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
NP_850846.1
  • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6178354..6182761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121864.4 → NP_197360.2  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197360.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G2E5, B9DFP5, Q0WWX4, Q8L869
    Conserved Domains (3) summary
    PLN02193
    Location:65 → 308
    PLN02193; nitrile-specifier protein
    PLN02939
    Location:428 → 698
    PLN02939; transferase, transferring glycosyl groups
    sd00038
    Location:79 → 133
    Kelch; KELCH repeat [structural motif]

  2. NM_180515.2 → NP_850846.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G2E5, B9DFP5, Q0WWX4, Q8L869
    Conserved Domains (3) summary
    PLN02193
    Location:65 → 308
    PLN02193; nitrile-specifier protein
    PLN02939
    Location:428 → 698
    PLN02939; transferase, transferring glycosyl groups
    sd00038
    Location:79 → 133
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
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