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Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831973, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger C-x8-C-x5-C-x3-H type family protein
Primary source
TAIR:AT5G18550
Locus tag
AT5G18550
See related
Araport:AT5G18550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28N17.30; T28N17_30
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (6160097..6163171)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene protein serine/threonine kinase Neighboring gene E3 ubiquitin-protein ligase Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene GTP1/OBG family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343553.1
NM_001343554.1
NM_001343555.1
NM_121860.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger C-x8-C-x5-C-x3-H type family protein
NP_197356.2
  • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G06410.1); Has 2990 Blast hits to 1278 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 599; Fungi - 302; Plants - 1043; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6160097..6163171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121860.5 → NP_197356.2  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197356.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WLM3, Q6NPN3
    UniProtKB/TrEMBL
    A0A178U784, A0A5S9Y5X4
    Conserved Domains (1) summary
    pfam00642
    Location:99 → 124
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. NM_001343553.1 → NP_001330397.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAN4

  3. NM_001343554.1 → NP_001330396.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U807, A0A1P8BAQ5, A0A384KSH8
    Conserved Domains (1) summary
    pfam00642
    Location:67 → 92
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. NM_001343555.1 → NP_001330398.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAP3, A0A7G2FEX6
    Conserved Domains (1) summary
    pfam00642
    Location:99 → 124
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NPN3.1

Gene LinkOut

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