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transcription regulator NOT2/NOT3/NOT5 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831941, updated on 18-Sep-2024

Summary

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Official Full Name
transcription regulator NOT2/NOT3/NOT5 family protein
Primary source
TAIR:AT5G18230
Locus tag
AT5G18230
See related
Araport:AT5G18230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRG7.19; MRG7_19
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (6021379..6027299, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene myb-related protein 1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161244.1
NM_001343540.1
NM_001343541.1
NM_121828.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcription regulator NOT2/NOT3/NOT5 family protein
NP_001154716.1
  • transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3972 Blast hits to 2940 proteins in 410 species: Archae - 18; Bacteria - 365; Metazoa - 1231; Fungi - 912; Plants - 255; Viruses - 11; Other Eukaryotes - 1180 (source: NCBI BLink).
NP_568361.1
  • transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6021379..6027299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121828.5 → NP_568361.1  transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568361.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G2A7, F4JWJ6, Q94JY7
    Conserved Domains (2) summary
    COG5665
    Location:12 → 839
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 233
    Not3; Not1 N-terminal domain, CCR4-Not complex component

  2. NM_001343541.1 → NP_001330084.1  transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9R0, Q94JY7

  3. NM_001161244.1 → NP_001154716.1  transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154716.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JWJ7, Q94JY7
    Conserved Domains (3) summary
    COG5665
    Location:12 → 841
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    pfam04065
    Location:3 → 235
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:704 → 837
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  4. NM_001343540.1 → NP_001330085.1  transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9Q7, Q94JY7
Nucleotide Protein
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