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dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831892, updated on 18-Sep-2024

Summary

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Official Full Name
dentin sialophosphoprotein-like protein
Primary source
TAIR:AT5G02520
Locus tag
AT5G02520
See related
Araport:AT5G02520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
KINETOCHORE NULL 2; KNL2; T22P11.110; T22P11_110
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (561179..564142)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene UDP-glucose 6-dehydrogenase Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Targeting of Arabidopsis KNL2 to Centromeres Depends on the Conserved CENPC-k Motif in Its C Terminus. Sandmann M, et al. Plant Cell, 2017 Jan. PMID 28062749, Free PMC Article
  2. Arabidopsis kinetochore null2 is an upstream component for centromeric histone H3 variant cenH3 deposition at centromeres. Lermontova I, et al. Plant Cell, 2013 Sep. PMID 24014547, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data suggest that KINETOCHORE NULL2 (KNL2) recognizes centromeric nucleosomes, similar to centromere protein C (CENP-C), via the CENPC-k motif and binds adjoining DNA.
    Title: Targeting of Arabidopsis KNL2 to Centromeres Depends on the Conserved CENPC-k Motif in Its C Terminus.
  2. Arabidopsis KNL2 colocalizes with cenH3 and is associated with centromeres during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase.
    Title: Arabidopsis kinetochore null2 is an upstream component for centromeric histone H3 variant cenH3 deposition at centromeres.
Submit: New GeneRIF Correction

General gene information

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NM_001342657.1
NM_001342658.1
NM_120330.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in CENP-A containing chromatin assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chromocenter IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
dentin sialophosphoprotein-like protein
NP_568101.4
  • CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    561179..564142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120330.7 → NP_568101.4  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568101.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KCE9, Q94A31, Q9LZ50
    UniProtKB/TrEMBL
    A0A654FXS5
    Conserved Domains (1) summary
    pfam09133
    Location:19 → 112
    SANTA; SANTA (SANT Associated)

  2. NM_001342657.1 → NP_001332609.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHH1, A0A5S9Y0S5

  3. NM_001342658.1 → NP_001332608.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHH3, A0A654FXS5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KCE9.1

Gene LinkOut

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