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Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831881, updated on 18-Sep-2024

Summary

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Official Full Name
Pathogenesis-related thaumatin superfamily protein
Primary source
TAIR:AT5G02140
Locus tag
AT5G02140
See related
Araport:AT5G02140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7H20.190; T7H20_190
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (423202..424437)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CYCLIN D7;1 Neighboring gene one helix protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Fes1C Neighboring gene uncharacterized protein Neighboring gene Transmembrane amino acid transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of sticky generative cell mutants reveals that suppression of callose deposition in the generative cell is necessary for generative cell internalization and differentiation in Arabidopsis. Oh SA, et al. Plant J, 2021 Apr. PMID 33458909
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_120292.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pathogenesis-related thaumatin superfamily protein
NP_195834.1
  • Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.2); Has 1588 Blast hits to 1558 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 96; Plants - 1388; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    423202..424437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342647.1 → NP_001331114.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178URU8, A0A1P8BCW7, A0A384LL40, A0A654FXI2
    Conserved Domains (1) summary
    pfam00314
    Location:27 → 241
    Thaumatin; Thaumatin family

  2. NM_120292.2 → NP_195834.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195834.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FXI2, Q9LZL8
    Conserved Domains (1) summary
    pfam00314
    Location:27 → 241
    Thaumatin; Thaumatin family
Nucleotide Protein
Heading Accession and Version

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