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RAB8C RAB GTPase homolog 8C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831817, updated on 18-Sep-2024

Summary

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Official Symbol
RAB8C
Official Full Name
RAB GTPase homolog 8C
Primary source
TAIR:AT5G03520
Locus tag
AT5G03520
See related
Araport:AT5G03520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS RAB HOMOLOG E1D; ATRAB-E1D; ATRAB8C; ATRABE1D; F12E4.300; F12E4_300; RAB GTPase homolog 8C; RAB HOMOLOG E1D; RAB-E1D
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Genomic context

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See RAB8C in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (883311..885451)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mediator complex, subunit Med7 Neighboring gene C2H2-type zinc finger family protein Neighboring gene RAB GTPase homolog C2A Neighboring gene exocyst subunit exo70 family protein A1 Neighboring gene expressed in response to phosphate starvation protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subcellular localization and functional analysis of the Arabidopsis GTPase RabE. Speth EB, et al. Plant Physiol, 2009 Apr. PMID 19233904, Free PMC Article
  2. Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase. Camacho L, et al. J Cell Sci, 2009 Dec 1. PMID 19903693
  3. CHARACTERIZATION OF A RABE (RAS GENE FROM RAT BRAIN E) GTPASE EXPRESSED DURING MORPHOGENESIS IN THE UNICELLULAR GREEN ALGA MICRASTERIAS DENTICULATA (ZYGNEMATOPHYCEAE, STREPTOPHYTA)(1). Vannerum K, et al. J Phycol, 2012 Jun. PMID 27011085
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036750.1
NM_120432.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RAB GTPase homolog 8C
NP_001031827.1
  • RAB GTPase homolog 8C (RAB8C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1E (TAIR:AT3G09900.1); Has 25713 Blast hits to 25688 proteins in 729 species: Archae - 2; Bacteria - 99; Metazoa - 13473; Fungi - 3651; Plants - 2845; Viruses - 20; Other Eukaryotes - 5623 (source: NCBI BLink).
NP_195972.1
  • RAB GTPase homolog 8C (RAB8C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1E (TAIR:AT3G09900.1); Has 29771 Blast hits to 29709 proteins in 824 species: Archae - 21; Bacteria - 191; Metazoa - 15611; Fungi - 4242; Plants - 3476; Viruses - 20; Other Eukaryotes - 6210 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    883311..885451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120432.5 → NP_195972.1  RAB GTPase homolog 8C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195972.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V3A4, Q8LBQ4, Q9LZD4
    UniProtKB/TrEMBL
    A0A178UJN5, A0A5S9Y120
    Conserved Domains (1) summary
    cd01867
    Location:13 → 180
    Rab8_Rab10_Rab13_like; Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

  2. NM_001036750.1 → NP_001031827.1  RAB GTPase homolog 8C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031827.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V885
    Conserved Domains (2) summary
    PTZ00099
    Location:40 → 202
    PTZ00099; rab6; Provisional
    cl21455
    Location:40 → 170
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LZD4.1

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