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F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831746, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT5G02910
Locus tag
AT5G02910
See related
Araport:AT5G02910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9G14.220; F9G14_220
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (677031..679263)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene cytochrome P450, family 96, subfamily A, polypeptide 13 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene ion channel POLLUX-like protein, putative (DUF1012)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203281.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_001190210.1
  • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G02930.1).
NP_195911.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G28410.1); Has 2251 Blast hits to 2211 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2247; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    677031..679263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342679.1 → NP_001330297.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7Y7, A0A1P8BAD4, A0A384LM61

  2. NM_120369.3 → NP_195911.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195911.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LG97, Q9LYZ4
    UniProtKB/TrEMBL
    A0A5S9Y148, A0A654FXX7
    Conserved Domains (2) summary
    sd00032
    Location:133 → 154
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:11 → 58
    F-box; F-box domain

  3. NM_001203281.1 → NP_001190210.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190210.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KDV0
    Conserved Domains (2) summary
    sd00032
    Location:133 → 154
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:11 → 48
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYZ4.1

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