KDTA KDO transferase A [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: KDTA
Official Full Name: KDO transferase A
Primary source: TAIR:AT5G03770
Locus tag: AT5G03770
See related: Araport:AT5G03770
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtKdtA; F17C15.190; F17C15_190; KDO transferase A
Summary: Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase
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Genomic context

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See KDTA in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 10

Sequence:: Chromosome: 5; NC_003076.8 (995095..997849)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The AtKDTA encodes a putative Kdo transferase (KDTA) involved in the synthesis of a mitochondrial not yet identified lipid A-like molecule rather than in the synthesis of the cell wall RG-II. [AtKDTA]
Title: Characterization of a putative 3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana.

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Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_001342730.1

Supported by ESTs:

NM_120458.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables Kdo transferase activity	IEA Inferred from Electronic Annotation more info
enables glycosyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in Kdo2-lipid A biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: KDO transferase A

NP_195997.2

KDO transferase A (KDTA); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal (InterPro:IPR007507); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

995095..997849

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342729.1 → NP_001331079.1 KDO transferase A [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BCS9

Conserved Domains (1) summary

PRK05749
Location:9 → 321

PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
NM_120458.3 → NP_195997.2 KDO transferase A [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195997.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8VZA5, Q9FFN3, Q9LZR2

UniProtKB/TrEMBL

A0A178UTI4, A0A384KX57, A0A7G2F5C9, W8QNB9

Conserved Domains (1) summary

PRK05749
Location:9 → 415

PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
NM_001342730.1 → NP_001331078.1 KDO transferase A [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BCT3, A0A7G2F5C9

Conserved Domains (1) summary

PRK05749
Location:1 → 348

PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed