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GPI-anchored protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831711, updated on 18-Sep-2024

Summary

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Official Full Name
GPI-anchored protein
Primary source
TAIR:AT5G01280
Locus tag
AT5G01280
See related
Araport:AT5G01280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BASIC PROLINE-RICH PROTEIN3; BPP3; T10O8.1
Summary
Encodes a microtubule-associated protein.
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (113921..116411, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding-like fold Neighboring gene carboxyl-terminal domain (ctd) phosphatase-like 2 Neighboring gene mRNA capping enzyme family protein Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein Neighboring gene transcription factor bHLH140-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
  2. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342581.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
part_of microtubule associated complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
GPI-anchored protein
NP_001318449.1
  • BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    113921..116411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120206.3 → NP_195748.1  GPI-anchored protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195748.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FBC6, Q9LFA8
    Conserved Domains (1) summary
    PHA03247
    Location:156 → 273
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001342582.1 → NP_001330105.1  GPI-anchored protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQI7, A0A1P8B9S1

  3. NM_001342581.1 → NP_001318449.1  GPI-anchored protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y118, A0A654FXE0, F4K804
    Conserved Domains (1) summary
    PHA03247
    Location:180 → 297
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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