U.S. flag

An official website of the United States government

ESP4 HEAT repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831597, updated on 18-Sep-2024

Summary

Official Symbol
ESP4
Official Full Name
HEAT repeat-containing protein
Primary source
TAIR:AT5G01400
Locus tag
AT5G01400
See related
Araport:AT5G01400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ENHANCED SILENCING PHENOTYPE 4; T10O8.110; T10O8_110
Summary
Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ESP4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
26
Sequence:
Chromosome: 5; NC_003076.8 (162522..171302, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene DNAJ heat shock family protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Glutaredoxin family protein

Interactions

General gene information

NM_120218.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm  
part_of mRNA cleavage and polyadenylation specificity factor complex PubMed 

General protein information

Preferred Names
HEAT repeat-containing protein
NP_195760.1
  • ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    162522..171302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342587.1NP_001330013.1  HEAT repeat-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9B4, A0A1P8B9H2
  2. NM_001342588.1NP_001330014.1  HEAT repeat-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9H4, A0A5S9Y2M0
  3. NM_120218.2NP_195760.1  HEAT repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195760.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y2M0, Q9M033
    Conserved Domains (4) summary
    pfam11935
    Location:95311
    DUF3453; Domain of unknown function (DUF3453)
    pfam12295
    Location:10331196
    Symplekin_C; Symplekin tight junction protein C terminal
    pfam13646
    Location:46105
    HEAT_2; HEAT repeats
    sd00044
    Location:4674
    HEAT; HEAT repeat [structural motif]
External link. Please review our privacy policy.