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transmembrane protein, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831585, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF1218)
Primary source
TAIR:AT5G17210
Locus tag
AT5G17210
See related
Araport:AT5G17210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MKP11.6; MKP11_6
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5656348..5658193)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated-like protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene glutathione S-transferase phi 12 Neighboring gene PHYTOENE SYNTHASE Neighboring gene SET domain group 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343482.1
NM_121727.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF1218)
NP_001318579.1
  • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_568343.1
  • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5656348..5658193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121727.3 → NP_568343.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568343.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPP0, A0A7G2FAB2, Q94C50
    Conserved Domains (1) summary
    pfam06749
    Location:61 → 155
    DUF1218; Protein of unknown function (DUF1218)

  2. NM_001343482.1 → NP_001318579.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KGX3, Q9FFI8
Nucleotide Protein
Heading Accession and Version

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