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Peptidyl-tRNA hydrolase II (PTH2) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831550, updated on 18-Sep-2024

Summary

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Official Full Name
Peptidyl-tRNA hydrolase II (PTH2) family protein
Primary source
TAIR:AT5G16870
Locus tag
AT5G16870
See related
Araport:AT5G16870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2K13.20; F2K13_20
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (5546811..5548777, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene binding partner of acd11 1 Neighboring gene telomerase reverse transcriptase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Target of Myb protein 1 Neighboring gene Exostosin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_121693.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables aminoacyl-tRNA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Peptidyl-tRNA hydrolase II (PTH2) family protein
NP_568340.1
  • Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT3G03010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5546811..5548777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121693.2 → NP_568340.1  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568340.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G247, Q1H5E3, Q8LBQ1
    Conserved Domains (1) summary
    cd02430
    Location:56 → 169
    PTH2; Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in ...
Nucleotide Protein
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