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HEAT repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831480, updated on 18-Sep-2024

Summary

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Official Full Name
HEAT repeat-containing protein
Primary source
TAIR:AT5G16210
Locus tag
AT5G16210
See related
Araport:AT5G16210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21H19.130; T21H19_130
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Sequence:
Chromosome: 5; NC_003076.8 (5290696..5298169, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose synthase like A11 Neighboring gene 50S ribosomal protein-like protein Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein Neighboring gene ncRNA Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121626.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in intracellular cholesterol transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HEAT repeat-containing protein
NP_197125.2
  • HEAT repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), LisH dimerisation motif (InterPro:IPR006594), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5290696..5298169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121626.4 → NP_197125.2  HEAT repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197125.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G1K3, Q8VYW7
    Conserved Domains (2) summary
    sd00044
    Location:932 → 962
    HEAT; HEAT repeat [structural motif]
    cl02219
    Location:207 → 263
    Bap31; B-cell receptor-associated protein 31-like
Nucleotide Protein
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