U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CRS1 maize chloroplast splicing factor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831476, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CRS1
Official Full Name
maize chloroplast splicing factor-like protein
Primary source
TAIR:AT5G16180
Locus tag
AT5G16180
See related
Araport:AT5G16180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1; ATCRS1; ortholog of maize chloroplast splicing factor CRS1; T21H19.100; T21H19_100
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CRS1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (5279884..5283102)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plastidic GLC translocator Neighboring gene uncharacterized protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene cellulose synthase like A11 Neighboring gene 50S ribosomal protein-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Asakura Y, et al. Plant Physiol, 2006 Dec. PMID 17071648, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The mutant phenotype associated with T-DNA insertions in the Arabidopsis gene AtCRS1, encoding the ortholog of the maize chloroplast splicing factor CRS1, was examined.
    Title: Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_121623.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within Group II intron splicing IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
maize chloroplast splicing factor-like protein
NP_197122.2
  • ortholog of maize chloroplast splicing factor CRS1 (CRS1); FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT3G18390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5279884..5283102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343439.1 → NP_001332392.1  maize chloroplast splicing factor-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGS4

  2. NM_121623.3 → NP_197122.2  maize chloroplast splicing factor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197122.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KCP9, Q9LF10
    UniProtKB/TrEMBL
    A0A654G1G8
    Conserved Domains (3) summary
    smart01103
    Location:361 → 445
    CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
    pfam01985
    Location:214 → 290
    CRS1_YhbY; CRS1 / YhbY (CRM) domain
    cl19511
    Location:432 → 575
    DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LF10.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.