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Adenosylmethionine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831452, updated on 18-Sep-2024

Summary

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Official Full Name
Adenosylmethionine decarboxylase family protein
Primary source
TAIR:AT5G15950
Locus tag
AT5G15950
See related
Araport:AT5G15950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N13.90; F1N13_90
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5205869..5208036)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plant adhesion molecule 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene stress-responsive protein (KIN1) / stress-induced protein (KIN1) Neighboring gene stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Miscellaneous features

  • Loc: 5206432-5206587 AT5G15950.uORF1
NM_001036811.1
NM_121600.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables adenosylmethionine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in spermine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Adenosylmethionine decarboxylase family protein
NP_001031888.1
  • Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1032 Blast hits to 1013 proteins in 270 species: Archae - 0; Bacteria - 57; Metazoa - 222; Fungi - 151; Plants - 533; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
NP_197099.1
  • Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5205869..5208036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121600.3 → NP_197099.1  Adenosylmethionine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197099.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7T9
    UniProtKB/TrEMBL
    A0A178UR54
    Conserved Domains (1) summary
    PLN02524
    Location:1 → 357
    PLN02524; S-adenosylmethionine decarboxylase

  2. NM_001036811.1 → NP_001031888.1  Adenosylmethionine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031888.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7T9
    UniProtKB/TrEMBL
    A0A178UR54
    Conserved Domains (1) summary
    PLN02524
    Location:1 → 357
    PLN02524; S-adenosylmethionine decarboxylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S7T9.1

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