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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831435, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT5G15790
Locus tag
AT5G15790
See related
Araport:AT5G15790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14F8.170; F14F8_170
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (5148722..5151433)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene glucose-6-phosphate acetyltransferase 1 Neighboring gene ncRNA Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene ncRNA Neighboring gene chaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001343423.1
NM_001343424.1
NM_121584.4
NM_203056.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_197083.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 5281 Blast hits to 5274 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 302; Plants - 2328; Viruses - 9; Other Eukaryotes - 839 (source: NCBI BLink).
NP_974785.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5148722..5151433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343422.1 → NP_001331487.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UE64, A0A5S9Y4G4, Q9LFU7

  2. NM_203056.3 → NP_974785.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974785.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UE64, A0A5S9Y4G4, Q9LFU7
    Conserved Domains (2) summary
    pfam12678
    Location:178 → 222
    zf-rbx1; RING-H2 zinc finger
    pfam13639
    Location:180 → 222
    zf-RING_2; Ring finger domain

  3. NM_001343423.1 → NP_001331488.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UCB9, A0A1P8BE16

  4. NM_121584.4 → NP_197083.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197083.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UE64, A0A5S9Y4G4, Q9LFU7
    Conserved Domains (2) summary
    pfam12678
    Location:178 → 222
    zf-rbx1; RING-H2 zinc finger
    pfam13639
    Location:180 → 222
    zf-RING_2; Ring finger domain

  5. NM_001343424.1 → NP_001331489.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UE64, A0A5S9Y4G4, Q9LFU7
Nucleotide Protein
Heading Accession and Version

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