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TPX2 (targeting protein for Xklp2) protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831404, updated on 18-Sep-2024

Summary

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Official Full Name
TPX2 (targeting protein for Xklp2) protein family
Primary source
TAIR:AT5G15510
Locus tag
AT5G15510
See related
Araport:AT5G15510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K14.120; T20K14_120
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (5033933..5036824)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UDP-glucose 6-dehydrogenase family protein Neighboring gene Ankyrin repeat family protein Neighboring gene Ribosomal protein S19e family protein Neighboring gene biotin carboxyl carrier protein 2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. HY5 inhibits lateral root initiation in Arabidopsis through negative regulation of the microtubule-stabilizing protein TPXL5. Qian Y, et al. Plant Cell, 2023 Mar 15. PMID 36512471, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HY5 inhibits lateral root initiation in Arabidopsis through negative regulation of the microtubule-stabilizing protein TPXL5.
    Title: HY5 inhibits lateral root initiation in Arabidopsis through negative regulation of the microtubule-stabilizing protein TPXL5.
Submit: New GeneRIF Correction

General gene information

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NM_001203387.1

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in regulation of mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TPX2 (targeting protein for Xklp2) protein family
NP_001190316.1
  • TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT3G01015.1).
NP_197055.2
  • TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT3G01015.1); Has 1184 Blast hits to 1000 proteins in 137 species: Archae - 0; Bacteria - 15; Metazoa - 507; Fungi - 52; Plants - 301; Viruses - 3; Other Eukaryotes - 306 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5033933..5036824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343403.1 → NP_001332458.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGZ9, Q9LF31

  2. NM_121555.3 → NP_197055.2  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197055.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K9T9, Q9LF31
    Conserved Domains (1) summary
    pfam06886
    Location:388 → 442
    TPX2; Targeting protein for Xklp2 (TPX2)

  3. NM_001343404.1 → NP_001332457.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGZ9, Q9LF31

  4. NM_001203387.1 → NP_001190316.1  TPX2 (targeting protein for Xklp2) protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190316.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K9U0, Q9LF31
    Conserved Domains (1) summary
    pfam06886
    Location:388 → 442
    TPX2; Targeting protein for Xklp2 (TPX2)
Nucleotide Protein
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