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Phosphoglycerate mutase-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831359, updated on 18-Sep-2024

Summary

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Official Full Name
Phosphoglycerate mutase-like family protein
Primary source
TAIR:AT5G15070
Locus tag
AT5G15070
See related
Araport:AT5G15070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G14.190; F2G14_190
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Genomic context

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Location:
chromosome: 5
Exon count:
32
Sequence:
Chromosome: 5; NC_003076.8 (4876515..4885836)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene Protein kinase superfamily protein Neighboring gene voltage dependent anion channel 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VIH2 Regulates the Synthesis of Inositol Pyrophosphate InsP8 and Jasmonate-Dependent Defenses in Arabidopsis. Laha D, et al. Plant Cell, 2015 Apr. PMID 25901085, Free PMC Article
  2. Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana. Gilliland LU, et al. Proc Natl Acad Sci U S A, 2006 Dec 5. PMID 17077148, Free PMC Article
  3. Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis. Zhu J, et al. Elife, 2019 Aug 22. PMID 31436531, Free PMC Article
  4. Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants. Desai M, et al. Plant J, 2014 Nov. PMID 25231822
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001203384.1
NM_001343387.1
NM_001343388.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 5-diphosphoinositol pentakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables 5-diphosphoinositol pentakisphosphate 1-kinase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables diphosphoinositol pentakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables diphosphoinositol pentakisphosphate kinase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables diphosphoinositol pentakisphosphate kinase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables inositol hexakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate 3-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate kinase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables inositol hexakisphosphate kinase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables inositol-1,3,4,5,6-pentakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in inositol metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within inositol phosphate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in inositol phosphate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within phosphorylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of vitamin E biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Phosphoglycerate mutase-like family protein
NP_001190313.1
  • Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, leaf whorl, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2).
NP_568308.1
  • Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4876515..4885836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343386.1 → NP_001330694.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBL1, A0A5S9Y4Y3, A0A654G1C1, A0A7G2F803
    Conserved Domains (3) summary
    pfam00328
    Location:368 → 959
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
    pfam18086
    Location:13 → 108
    PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
    cl17255
    Location:28 → 300
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  2. NM_121511.2 → NP_568308.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568308.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K8B7, Q84WW3, Q93YV1, Q9LFP8
    UniProtKB/TrEMBL
    A0A5S9Y4Y3, A0A654G1C1, A0A7G2F7R8
    Conserved Domains (3) summary
    pfam00328
    Location:362 → 953
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
    pfam18086
    Location:13 → 102
    PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
    cl17255
    Location:17 → 294
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  3. NM_001343384.1 → NP_001330691.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBK5, A0A5S9Y4Y3, A0A654G1C1

  4. NM_001343385.1 → NP_001330695.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K8B7, Q84WW3, Q93YV1, Q9LFP8
    UniProtKB/TrEMBL
    A0A5S9Y4Y3, A0A654G1C1, A0A7G2F7R8
    Conserved Domains (3) summary
    pfam00328
    Location:362 → 953
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
    pfam18086
    Location:13 → 102
    PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
    cl17255
    Location:17 → 294
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  5. NM_001203384.1 → NP_001190313.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190313.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y4Y3, A0A654G1C1
    Conserved Domains (2) summary
    pfam00328
    Location:362 → 938
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
    cl17255
    Location:102 → 293
    ATP-grasp_4; ATP-grasp domain

  6. NM_001343387.1 → NP_001330693.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UC62, A0A1P8BBN0

  7. NM_001343388.1 → NP_001330692.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UC62, A0A1P8BBN0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WW3.1

Gene LinkOut

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