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Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831356, updated on 18-Sep-2024

Summary

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Official Full Name
Paired amphipathic helix (PAH2) superfamily protein
Primary source
TAIR:AT5G15040
Locus tag
AT5G15040
See related
Araport:AT5G15040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G14.160; F2G14_160
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (4869754..4870741, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Lateral organ boundaries (LOB) domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Paired amphipathic helix (PAH2) superfamily protein
NP_001318564.1
  • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.1); Has 562 Blast hits to 542 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 132; Plants - 211; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4869754..4870741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343381.1 → NP_001318564.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y484, Q9LFQ1
    Conserved Domains (1) summary
    pfam02671
    Location:20 → 64
    PAH; Paired amphipathic helix repeat

  2. NM_001343382.1 → NP_001332029.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y484, Q9LFQ1
    Conserved Domains (1) summary
    pfam02671
    Location:20 → 64
    PAH; Paired amphipathic helix repeat

  3. NM_001343383.1 → NP_001332030.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y484, Q9LFQ1
    Conserved Domains (1) summary
    pfam02671
    Location:20 → 64
    PAH; Paired amphipathic helix repeat
Nucleotide Protein
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