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MYB40 myb domain protein 40 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831284, updated on 18-Sep-2024

Summary

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Official Symbol
MYB40
Official Full Name
myb domain protein 40
Primary source
TAIR:AT5G14340
Locus tag
AT5G14340
See related
Araport:AT5G14340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB40; F18O22.130; F18O22_130; myb domain protein 40
Summary
Member of the R2R3 factor gene family.
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Genomic context

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See MYB40 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (4623198..4624960)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene carboxyesterase 16 Neighboring gene Ribosomal protein S13/S18 family Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene early nodulin-like protein 21 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcription factor MYB40 is a central regulator in arsenic resistance in Arabidopsis. Chen Y, et al. Plant Commun, 2021 Nov 8. PMID 34778748, Free PMC Article
  2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121438.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to arsenic-containing substance IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 40
NP_196938.2
  • myb domain protein 40 (MYB40); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 20 (TAIR:AT1G66230.1); Has 8800 Blast hits to 8097 proteins in 536 species: Archae - 0; Bacteria - 0; Metazoa - 861; Fungi - 444; Plants - 5790; Viruses - 6; Other Eukaryotes - 1699 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4623198..4624960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343333.1 → NP_001330910.1  myb domain protein 40 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BC92, O65720

  2. NM_121438.3 → NP_196938.2  myb domain protein 40 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPE5, F4K6R6, Q9LY95
Nucleotide Protein
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