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translocon-associated protein beta (TRAPB) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831251, updated on 18-Sep-2024

Summary

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Official Full Name
translocon-associated protein beta (TRAPB) family protein
Primary source
TAIR:AT5G14030
Locus tag
AT5G14030
See related
Araport:AT5G14030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUA22.2; MUA22_2
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (4526766..4529614)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene tRNA-Lys Neighboring gene phosphate transporter 3;1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001125749.1
NM_001125751.1
NM_001343312.1
NM_001343313.1
NM_121406.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
translocon-associated protein beta (TRAPB) family protein
NP_001119221.1
  • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001119223.1
  • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001318558.1
  • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_568293.1
  • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4526766..4529614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121406.5 → NP_568293.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568293.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
    Conserved Domains (1) summary
    pfam05753
    Location:13 → 192
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  2. NM_001343313.1 → NP_001331889.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BF69

  3. NM_001125751.1 → NP_001119223.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119223.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
    Conserved Domains (1) summary
    pfam05753
    Location:13 → 192
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  4. NM_001125749.1 → NP_001119221.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119221.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
    Conserved Domains (1) summary
    pfam05753
    Location:13 → 192
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  5. NM_001343312.1 → NP_001318558.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
    Conserved Domains (1) summary
    pfam05753
    Location:13 → 192
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version

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