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EXO70C2 exocyst subunit exo70 family protein C2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831247, updated on 18-Sep-2024

Summary

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Official Symbol
EXO70C2
Official Full Name
exocyst subunit exo70 family protein C2
Primary source
TAIR:AT5G13990
Locus tag
AT5G13990
See related
Araport:AT5G13990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXO70C2; exocyst subunit exo70 family protein C2; MAC12.17; MAC12_17
Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
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Genomic context

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See EXO70C2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (4514568..4516892, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear factor kappa-B-binding protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein Neighboring gene midasin-like protein Neighboring gene Glycosyl hydrolase family 38 protein Neighboring gene NAC domain containing protein 84 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2. Saccomanno A, et al. Front Plant Sci, 2020. PMID 33519861, Free PMC Article
  2. EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen. Synek L, et al. Plant Physiol, 2017 May. PMID 28356503, Free PMC Article
  3. Characterization of the Arabidopsis thaliana exocyst complex gene families by phylogenetic, expression profiling, and subcellular localization studies. Chong YT, et al. New Phytol, 2010 Jan. PMID 19895414
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_121402.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_negative_effect regulation of pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
NOT located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
exocyst subunit exo70 family protein C2
NP_196903.1
  • exocyst subunit exo70 family protein C2 (EXO70C2); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein C1 (TAIR:AT5G13150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4514568..4516892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121402.2 → NP_196903.1  exocyst subunit exo70 family protein C2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196903.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFX6
    UniProtKB/TrEMBL
    A0A178UPG0, A0A654G1H8
    Conserved Domains (1) summary
    pfam03081
    Location:325 → 677
    Exo70; Exo70 exocyst complex subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFX6.1

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