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FtsJ-like methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831229, updated on 18-Sep-2024

Summary

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Official Full Name
FtsJ-like methyltransferase family protein
Primary source
TAIR:AT5G13830
Locus tag
AT5G13830
See related
Araport:AT5G13830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAC12.22; MAC12_22
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (4467311..4468487)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene telomeric DNA binding protein 1 Neighboring gene uncharacterized protein Neighboring gene FIZZY-related 3 Neighboring gene ncRNA Neighboring gene tRNA-Lys

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_121386.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within methylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FtsJ-like methyltransferase family protein
NP_196887.1
  • FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding, RNA methyltransferase activity; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, root, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: 23S ribosomal RNA methyltransferase (InterPro:IPR016448), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4467311..4468487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121386.2 → NP_196887.1  FtsJ-like methyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196887.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UL65, A0A654G0S9, Q9SXH3
    Conserved Domains (1) summary
    COG0293
    Location:8 → 224
    RlmE; 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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