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Plasma-membrane choline transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831221, updated on 18-Sep-2024

Summary

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Official Full Name
Plasma-membrane choline transporter family protein
Primary source
TAIR:AT5G13760
Locus tag
AT5G13760
See related
Araport:AT5G13760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXE10.1; MXE10_1
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (4441858..4445014)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc induced facilitator 1 Neighboring gene zinc induced facilitator-like 1 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene AGAMOUS-like 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121379.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plasma-membrane choline transporter family protein
NP_196880.2
  • Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4441858..4445014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121379.4 → NP_196880.2  Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196880.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G0T4, F4K425, Q8W4H3
    Conserved Domains (1) summary
    pfam04515
    Location:249 → 534
    Choline_transpo; Plasma-membrane choline transporter
Nucleotide Protein
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