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Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831177, updated on 18-Sep-2024

Summary

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Official Full Name
Auxin-responsive GH3 family protein
Primary source
TAIR:AT5G13360
Locus tag
AT5G13360
See related
Araport:AT5G13360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22N19.10; T22N19_10
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (4283356..4286342)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene arginine/glutamate-rich 1 protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Auxin-responsive GH3 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036797.3
NM_121339.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Auxin-responsive GH3 family protein
NP_001031874.1
  • Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1684 Blast hits to 1518 proteins in 244 species: Archae - 0; Bacteria - 582; Metazoa - 54; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).
NP_001190301.1
  • Auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1).
NP_196840.1
  • Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4283356..4286342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203372.2 → NP_001190301.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190301.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKT2, F4K2J2
    Conserved Domains (2) summary
    cl21606
    Location:79 → 664
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:95 → 642
    GH3; GH3 auxin-responsive promoter

  2. NM_121339.2 → NP_196840.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196840.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN87, Q9LYS0
    Conserved Domains (2) summary
    cl21606
    Location:1 → 586
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:17 → 564
    GH3; GH3 auxin-responsive promoter

  3. NM_001036797.3 → NP_001031874.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031874.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN87, Q9LYS0
    Conserved Domains (2) summary
    cl21606
    Location:1 → 586
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:17 → 564
    GH3; GH3 auxin-responsive promoter
Nucleotide Protein
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