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EXO70C1 exocyst subunit exo70 family protein C1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831154, updated on 18-Sep-2024

Summary

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Official Symbol
EXO70C1
Official Full Name
exocyst subunit exo70 family protein C1
Primary source
TAIR:AT5G13150
Locus tag
AT5G13150
See related
Araport:AT5G13150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXO70C1; exocyst subunit exo70 family protein C1; T19L5.110; T19L5_110
Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
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Genomic context

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See EXO70C1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (4172734..4175362, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene senescence-associated gene 29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen. Synek L, et al. Plant Physiol, 2017 May. PMID 28356503, Free PMC Article
  2. Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin. Kulich I, et al. New Phytol, 2010 Oct. PMID 20618910
  3. Expression and functional analyses of EXO70 genes in Arabidopsis implicate their roles in regulating cell type-specific exocytosis. Li S, et al. Plant Physiol, 2010 Dec. PMID 20943851, Free PMC Article
  4. BYPASS1-LIKE regulates lateral root initiation via exocytic vesicular trafficking-mediated PIN recycling in Arabidopsis. Yang G, et al. J Integr Plant Biol, 2022 May. PMID 35249253
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121318.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of pollen tube growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
NOT located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
exocyst subunit exo70 family protein C1
NP_196819.1
  • exocyst subunit exo70 family protein C1 (EXO70C1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein C2 (TAIR:AT5G13990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4172734..4175362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121318.3 → NP_196819.1  exocyst subunit exo70 family protein C1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196819.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FY95
    UniProtKB/TrEMBL
    A0A5S9Y5X0
    Conserved Domains (1) summary
    pfam03081
    Location:274 → 640
    Exo70; Exo70 exocyst complex subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FY95.1

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