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CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831119, updated on 18-Sep-2024

Summary

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Official Full Name
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Primary source
TAIR:AT5G12440
Locus tag
AT5G12440
See related
Araport:AT5G12440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (4035181..4042254, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene FBD-like domain family protein Neighboring gene fringe-like protein (DUF604) Neighboring gene UvrABC system C protein, putative (DUF3411)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203367.1
NM_001343238.1
NM_001343239.1
NM_001343240.1
NM_001343241.1
NM_001343242.1
NM_001343243.1
NM_001343244.1
NM_001343245.1
NM_001343246.1
NM_001343247.1
NM_121282.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
NP_001318550.1
  • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2).
NP_001318551.1
  • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2).
NP_568277.5
  • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2); Has 264 Blast hits to 227 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 228; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4035181..4042254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121282.6 → NP_568277.5  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568277.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  2. NM_001343246.1 → NP_001332064.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFW7, A0A654G0X5

  3. NM_001343245.1 → NP_001332065.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  4. NM_001343244.1 → NP_001332066.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFW7, A0A654G0X5

  5. NM_001343242.1 → NP_001332068.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  6. NM_001343243.1 → NP_001332067.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFW7, A0A654G0X5

  7. NM_001343240.1 → NP_001318550.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  8. NM_001343239.1 → NP_001332061.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  9. NM_001343238.1 → NP_001332062.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFW7, A0A654G0X5

  10. NM_001343247.1 → NP_001332063.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  11. NM_001343241.1 → NP_001318551.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFW7, A0A654G0X5

  12. NM_001203367.1 → NP_001190296.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190296.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GS07, Q94CJ8
    UniProtKB/TrEMBL
    A0A178UC57, A0A5S9Y460
    Conserved Domains (2) summary
    smart00356
    Location:231 → 252
    ZnF_C3H1; zinc finger
    cd12458
    Location:359 → 428
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94CJ8.3

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