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SEC10 exocyst complex component sec10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831112, updated on 18-Sep-2024

Summary

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Official Symbol
SEC10
Official Full Name
exocyst complex component sec10
Primary source
TAIR:AT5G12370
Locus tag
AT5G12370
See related
Araport:AT5G12370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
exocyst complex component sec10
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Genomic context

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See SEC10 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Sequence:
Chromosome: 5; NC_003076.8 (4002742..4008804, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DUF4228 domain protein Neighboring gene Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene annexin 8 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals. Ding Y, et al. Mol Biol Cell, 2014 Feb. PMID 24307681, Free PMC Article
  2. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
  3. BYPASS1-LIKE regulates lateral root initiation via exocytic vesicular trafficking-mediated PIN recycling in Arabidopsis. Yang G, et al. J Integr Plant Biol, 2022 May. PMID 35249253
  4. RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis. Safavian D, et al. Plant Physiol, 2015 Dec. PMID 26443677, Free PMC Article
  5. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036794.2
NM_001036795.2
NM_121275.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within acceptance of pollen IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of exocyst IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular exosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
exocyst complex component sec10
NP_001031871.1
  • exocyst complex component sec10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 527 Blast hits to 483 proteins in 172 species: Archae - 0; Bacteria - 6; Metazoa - 178; Fungi - 247; Plants - 59; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
NP_001031872.1
  • exocyst complex component sec10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 533 Blast hits to 489 proteins in 174 species: Archae - 0; Bacteria - 6; Metazoa - 178; Fungi - 253; Plants - 59; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
NP_568270.3
  • exocyst complex component sec10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 527 Blast hits to 483 proteins in 172 species: Archae - 0; Bacteria - 6; Metazoa - 178; Fungi - 247; Plants - 59; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4002742..4008804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036794.2 → NP_001031871.1  exocyst complex component sec10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031871.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56W60, Q8RVQ5, Q94CK5, X5JA13
    UniProtKB/TrEMBL
    A0A654G0N5
    Conserved Domains (1) summary
    pfam07393
    Location:139 → 817
    Sec10; Exocyst complex component Sec10

  2. NM_121275.4 → NP_568270.3  exocyst complex component sec10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568270.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56W60, Q8RVQ5, Q94CK5, X5JA13
    UniProtKB/TrEMBL
    A0A654G0N5
    Conserved Domains (1) summary
    pfam07393
    Location:139 → 817
    Sec10; Exocyst complex component Sec10

  3. NM_001036795.2 → NP_001031872.1  exocyst complex component sec10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031872.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G0N5, F4K0X7
    Conserved Domains (1) summary
    pfam07393
    Location:139 → 812
    Sec10; Exocyst complex component Sec10
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
X5JA13.1

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