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YCF36, putative (DUF1230) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831057, updated on 18-Sep-2024

Summary

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Official Full Name
YCF36, putative (DUF1230)
Primary source
TAIR:AT5G11840
Locus tag
AT5G11840
See related
Araport:AT5G11840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14F18.10; F14F18_10
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (3813302..3814906, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene rhomboid family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Protein kinase superfamily protein Neighboring gene SCP1-like small phosphatase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001343215.1
NM_001343216.1
NM_001343217.1
NM_121222.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
YCF36, putative (DUF1230)
NP_196745.4
  • Protein of unknown function (DUF1230); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G67370.1); Has 313 Blast hits to 313 proteins in 90 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3813302..3814906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121222.5 → NP_196745.4  YCF36, putative (DUF1230) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196745.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y3E3, A0A654G0C8, B6IDH6
    Conserved Domains (1) summary
    pfam06799
    Location:63 → 203
    DUF1230; Protein of unknown function (DUF1230)

  2. NM_001343215.1 → NP_001331149.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHC6, A0A1P8BCZ9

  3. NM_001343216.1 → NP_001331150.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHC6, A0A1P8BD05

  4. NM_001343217.1 → NP_001331148.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHC6, A0A1P8BD02
Nucleotide Protein
Heading Accession and Version

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