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hypothetical protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831017, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF581)
Primary source
TAIR:AT5G11460
Locus tag
AT5G11460
See related
Araport:AT5G11460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15N18.50; F15N18_50
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (3656582..3659025, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene uncharacterized protein Neighboring gene CTC-interacting domain 5 Neighboring gene PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene bromo-adjacent homology (BAH) domain-containing protein Neighboring gene tRNA-Phe

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The FCS-LIKE ZINC FINGER 6 and 10 are involved in regulating osmotic stress responses in Arabidopsis. Jamsheer K M, et al. Plant Signal Behav, 2019. PMID 30871406, Free PMC Article
  2. FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis. Jamsheer K M, et al. Plant J, 2018 Apr. PMID 29406622
  3. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
  4. The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Nietzsche M, et al. Front Plant Sci, 2014. PMID 24600465, Free PMC Article
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121184.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to salt IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within seedling development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein (DUF581)
NP_196707.1
  • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3656582..3659025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121184.3 → NP_196707.1  hypothetical protein (DUF581) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196707.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LYE4
    UniProtKB/TrEMBL
    A0A178UQ49
    Conserved Domains (1) summary
    pfam04570
    Location:267 → 307
    zf-FLZ; zinc-finger of the FCS-type, C2-C2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYE4.1

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