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PPD5 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831016, updated on 18-Sep-2024

Summary

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Official Symbol
PPD5
Official Full Name
PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Primary source
TAIR:AT5G11450
Locus tag
AT5G11450
See related
Araport:AT5G11450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15N18.40; F15N18_40; PsbP domain protein 5
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Genomic context

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See PPD5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (3654392..3656647)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene uncharacterized protein Neighboring gene CTC-interacting domain 5 Neighboring gene hypothetical protein (DUF581) Neighboring gene bromo-adjacent homology (BAH) domain-containing protein Neighboring gene tRNA-Phe

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developmental defects in mutants of the PsbP domain protein 5 in Arabidopsis thaliana. Roose JL, et al. PLoS One, 2011. PMID 22174848, Free PMC Article
  2. Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways. Hong Y, et al. Plant Physiol, 2020 Feb. PMID 31776182, Free PMC Article
  3. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
  4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  5. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways.
    Title: Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways.
  2. The developmental defects observed in the ppd5 mutants are related to a deficiency in strigolactone biosynthesis.[PPD5]
    Title: Developmental defects in mutants of the PsbP domain protein 5 in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121183.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
NP_196706.2
  • Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3654392..3656647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343192.1 → NP_001331121.1  PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9N5, A0A1P8BCY0, A0A384KVS7
    Conserved Domains (1) summary
    cl03356
    Location:114 → 297
    DcrB

  2. NM_121183.5 → NP_196706.2  PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196706.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P82715, Q8VY65
    Conserved Domains (1) summary
    cl03356
    Location:96 → 279
    DUF1795; Domain of unknown function (DUF1795)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P82715.3

Gene LinkOut

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