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DPA Transcription factor DP [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830987, updated on 18-Sep-2024

Summary

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Official Symbol
DPA
Official Full Name
Transcription factor DP
Primary source
TAIR:AT5G02470
Locus tag
AT5G02470
See related
Araport:AT5G02470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DPA TRANSCRIPTION FACTOR; T22P11.60; T22P11_60
Summary
core cell cycle genes
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Genomic context

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See DPA in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (542318..544955, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance. Wang J, et al. Proc Natl Acad Sci U S A, 2023 May 9. PMID 37126711, Free PMC Article
  2. E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters. Kosugi S, et al. Plant J, 2002 Jan. PMID 12060226
  3. The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division. Magyar Z, et al. Plant Cell, 2005 Sep. PMID 16055635, Free PMC Article
  4. Characterization of two distinct DP-related genes from Arabidopsis thaliana. Magyar Z, et al. FEBS Lett, 2000 Dec 1. PMID 11108847
  5. Arabidopsis S6 kinase mutants display chromosome instability and altered RBR1-E2F pathway activity. Henriques R, et al. EMBO J, 2010 Sep 1. PMID 20683442, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance.
    Title: Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_120325.4
NM_180696.2
NM_180697.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DRM complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription factor DP
NP_195867.2
  • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851027.1
  • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 435 Blast hits to 435 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
NP_851028.1
  • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 435 Blast hits to 435 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    542318..544955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180697.3 → NP_851028.1  Transcription factor DP [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851028.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNY3, Q9LZ55
    UniProtKB/TrEMBL
    A0A178ULD9, A0A5S9Y0Q2
    Conserved Domains (3) summary
    cd14458
    Location:140 → 184
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:53 → 133
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:140 → 249
    DP; Transcription factor DP

  2. NM_120325.4 → NP_195867.2  Transcription factor DP [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195867.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNY3, Q9LZ55
    UniProtKB/TrEMBL
    A0A178ULD9, A0A5S9Y0Q2
    Conserved Domains (3) summary
    cd14458
    Location:140 → 184
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:53 → 133
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:140 → 249
    DP; Transcription factor DP

  3. NM_180696.2 → NP_851027.1  Transcription factor DP [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851027.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNY3, Q9LZ55
    UniProtKB/TrEMBL
    A0A178ULD9, A0A5S9Y0Q2
    Conserved Domains (3) summary
    cd14458
    Location:140 → 184
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:53 → 133
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:140 → 249
    DP; Transcription factor DP
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNY3.1

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