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Dof-type zinc finger DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830976, updated on 18-Sep-2024

Summary

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Official Full Name
Dof-type zinc finger DNA-binding family protein
Primary source
TAIR:AT5G02460
Locus tag
AT5G02460
See related
Araport:AT5G02460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22P11.50; T22P11_50
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (539249..541316, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L36e family protein Neighboring gene ncRNA Neighboring gene Transcription factor DP Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis. Kim HS, et al. Plant J, 2010 Nov. PMID 20807212
  2. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Miyashima S, et al. Nature, 2019 Jan. PMID 30626969, Free PMC Article
  3. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dof5.1 protein regulates leaf adaxial-abaxial polarity by controlling REV expression.
    Title: The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_120324.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plasmodesmata-mediated intercellular transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in polarity specification of adaxial/abaxial axis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within root radial pattern formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Dof-type zinc finger DNA-binding family protein
NP_195866.1
  • Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DNA binding with one finger 2.4 (TAIR:AT2G37590.1); Has 1212 Blast hits to 1182 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 69; Fungi - 10; Plants - 1097; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    539249..541316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120324.4 → NP_195866.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195866.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVM8, Q9LZ56
    UniProtKB/TrEMBL
    A0A5S9Y1J0, A0A654FXM3
    Conserved Domains (1) summary
    pfam02701
    Location:94 → 149
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LZ56.1

Gene LinkOut

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