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Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830975, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT5G11080
Locus tag
AT5G11080
See related
Araport:AT5G11080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5K6.70; T5K6_70
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (3517223..3520003, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene homeobox protein knotted-1-like 4 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene serine-rich protein-like protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin-like superfamily protein
NP_001190287.1
  • Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1).
NP_001318535.1
  • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3517223..3520003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203358.1 → NP_001190287.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHD1, A0A5S9Y3S4, F4JWE4
    Conserved Domains (2) summary
    smart00213
    Location:11 → 102
    UBQ; Ubiquitin homologues
    cl00155
    Location:11 → 104
    UBQ; Ubiquitin-like proteins

  2. NM_001343156.1 → NP_001331023.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCL0, A0A5S9Y3S4

  3. NM_001343155.1 → NP_001318535.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHD1, A0A5S9Y3S4, A0A654G027, Q9FY57
    Conserved Domains (1) summary
    cl28922
    Location:11 → 84
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
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